Oh rats, I'm sorry Susie. I just reread your post and duh, I didn't answer your question at all!
I've glue basted Warm & Natural, Warm & Plush, Hobbs Heirloom cotton, Fairfield 80/20, and one double-batted quilt that was Warm & Plush and Hobbs PolyDown. All of those batts were fine individually but as someone else warned me when I asked about glue basting a double batt, the full polyester battings are harder to glue. I went really heavy on the glue with the PolyDown plus I pinned about every 6 inches and it was still a little beastly to quilt but I loved the results.
How are you doing your glue and are you watering it down?
I found if I didn't water it down (first few times I used it) and didn't spread it out, I would get hard little lumps that were definitely more difficult to wash out later (we have a top loader) and there was obviously more areas that weren't secured.