I had the same issue on my embroidery machine with the proper needle/thread. Now no matter what I am sewing on it is always a topstitch needle. Since I started doing this I have had NO issues of any kind with my threads.
I also invested in the new needles that are suppose to last longer. They were cheaper at my LQS then the Schmetz at Jo-anns! They are great.
Good luck on your project.