I've spent way too much $$$ on my machine to not take care with things that I can control. I can control running over pins, I pin horizontally and as I approach the pin it is nothing to just pull it enough out of the way. It's not an extra step as it's all part of the process of feeding the fabric. For those seams that you need to leave the pin in until the last possible moment to keep the match, I just slow down those last two stitches and pull it out at the last moment.