I wouldn't bother repressing... I would just sew them as they are. Sometimes it happens, and it's not the end of the world.
I just finished a quilt top where because of how it was constructed, seams went every which way. Sometimes they locked, other times they were in the same direction. It would have been almost impossible to plan so that they would match, and repressing wasn't an option because some were sewn down elsewhere in the block. I just went with it, and it turned out fine; once it was assembled I couldn't even tell from the front.
PS: Welcome back to quilting!