I like to use containers that can adjusted according to storage needs. Something here might work for you.
https://www.artbin.com/sewing-super-satchel
Also think outside of the "box" for storage. Tackle box that is. My sewing box is a double tackle box. Decorate with your name and pretty stitckers. Make it your own with personalization. Fun stuff!
https://www.basspro.com/shop/en/plano-3950-satchel-box
It holds a tremendous amount of tools all in one place. Small scissors, bobbins, clips, needles, post-it notes, tape, ruler, etc, etc. That is just the top layer. Bottom layer has ruffler foot, a needle punch, specialty threads and more.
I use a small organizer for all my needles. There are 18 places and needles stack right in the spaces perfect. Easy to store and sort different types of needles. The lid has two lock buttons so no worries if it gets dropped or spilled.
https://www.joann.com/anti-tarnish-l...prefv1=Product
A plastic silverware tray holds rotary cutters.
Different size trays here to organize small items. There are small file drawers too. I have two of them for other small items. Bulk bobbins, scissors, rotary blades.
https://www.containerstore.com/s/bis...02093&q=bisley
I do RE-organize if a system no longer works for me.
Most of all---have fun!